genomics

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Official code repository for GATK versions 4 and up

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

Data intensive science for everyone.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Turn scattered health data into answers you can trace. Self-hosted AI health data engine for lab reports, wearables and genetics, with a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.

tools for working with genome variation graphs

A collaboratively written review paper on deep learning, genomics, and precision medicine

🧬 gget enables efficient querying of genomic reference databases

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Scripts to download genomes from the NCBI FTP servers

Cloud-native genomic dataframes and batch computing

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

A comprehensive tutorial about GWAS and PRS

Python library to facilitate genome assembly, annotation, and comparative genomics

Foundation Models for Genomics & Transcriptomics